Search tutorial

Four examples are provided on how to use the DNABook™

 

  1. From Accession number to DNA spot from the DNABook™.
    1. Access http://fantom3.gsc.riken.jp/ofc/index.html
    2. Enter an accession number (eg, AK036983) into the appropriate field, and a "DNABook™ Rearray ID" will be displayed.
    3. Open the DNABook™ to the appropriate page based on the Rearray ID, then locate the DNA on the page.
  2. Locations of the spotted DNA can be obtained using the ´DDBJ´ Accession number:

     

  3. From RIKEN CloneID to DNA in the DNABook™.
    1. Access http://fantom3.gsc.riken.jp/ofc/index.html
    2. Enter an accession number (eg, 9930033A02) into the appropriate field, and a "DNABook™ Rearray ID" will be displayed. Clicking the link will access FANTOM2DB
    3. Open the DNABook™ to the appropriate page based on the Rearray ID, then locate the DNA on the page.
  4. Locations of the spotted DNA can be obtained by using a RIKEN CloneID:

     

  5. From any keyword to DNA in the DNABook™.
    1. Access http://fantom2.gsc.riken.go.jp/db/search
    2. Enter key words into the "Keyword search for curated annotation" field.
    3. After the result is displayed, click "show as a text file".
    4. Displayed clone Ids in the text can be cut and pasted into the appropriate field at: http://fantom3.gsc.riken.jp/ofc/index.html and a DNABook™ Rearray ID will be displayed.
    5. Clicking the link will access FANTOM2DB
  6. Locations of DNA can be obtained using key words:

     

  7. From DNA in the book to gene name.
    1. Access http://fantom3.gsc.riken.jp/ofc/index.html
    2. Select one plate ID (e.g PX01014) from the "plate ID" tab.
    3. To access the FANTOM2DB, a well co-ordinate can be clicked on (eg. "A1" button) if a plate image is displayed.
  8. Gene names can be searched using spotted DNA in the DNABook™.