Protein Array Screening

 

General information

Protein Array Screening 1

 

 

Source BioScience's Protein Arrays contain the largest collection of arrayed proteins, which are derived from several human tissues. Each Protein Array consists of up to 27,648 E. coli-expressed proteins, which are printed in duplicate on a PVDF membrane. Clones for the production of Protein Arrays are sequenced and have undergone a stringent in-frame analysis. Source BioScience's Protein Arrays are suitable for serum screening and antibody epitope mapping.

 

Protein Array handbook

Clone resource flyer

 

Applications

 

 

  • Serum screening: Arrayed proteins are hybridised with (a minimum of 100 µl of customer-provided) human patient sera, to find auto-antibodies against targets related to disease, in e.g. autoimmune diseases.

 

  • Antibody epitope mapping: Arrayed proteins are incubated with monoclonal or purified antibodies (provided by customer). Positive signals can be used to determine which epitope is recognised by the antibody. This approach is valuable for all clinicians and researchers who would like to work with antibodies that are not fully characterised, especially for developing new antibodies for diagnostics or treatments.

 

 

Screening

Protein Array Screening 2

Patient serum (or plasma) or monoclonal or purified antibody, respectively, is incubated with the desired Source BioSciences Protein Array. Recognised proteins may be visualised with an ECF-labelled secondary antibody. Customer may either perform experiments on his or her own or employ Source BioScience for scanning of proteins and analysis of results. Source BioScience recommends to perform at least one replicate of the experiment. Identified proteins and corresponding clones can be provided as annotated clone lists, including EST sequence information, gene symbol, EnsEMBL-gene ID, UniGene cluster ID, protein structure information (if available), etc. Protein Array analysis images and all quality-control results are electronically documented.

 

 

Protein Array Screening 3

Fig.1: Serum Screening using Source BioSciences Protein Arrays. The image shows approx. 150 signals (double spots). The position of these proteins is determined and correlated with cDNA sequences encoding for the proteins on the array.

 

Reference Customers

 

Dr. Derek Murphey
Associate Director 
Centre for Human Proteomics
Royal College of Surgeons in Ireland
123 St Stephen's Green
Dublin 2
Ireland
Tel.: +353 1 402 8518
Fax: +353 1 402 8514
Homepage



Dr. Mark T. Bedford
University of Texas
M.D. A. Cancer Center, Dept.of Carcinogenesis
Smithville, USA
Homepage

 

References Proteinarrays

 

2010

 

M. Raab, H. Daxecker, R.J. Edwards, A. Treumann, D. Murphy, N. Moran.
Protein interactions with the platelet integrin alpha(IIb) regulatory motif.
Proteomics (2010) May 18. [Epub ahead of print]

 

E.W. Dervan, H. Chen, S.L. Ho, N. Brummel, J. Schmid, D. Toomey, M. Haralambova, E. Gould, D.M. Wallace, J.H. Prehn, C.J. O'Brien, D. Murphy
Protein macroarray profiling of serum autoantibodies in pseudoexfoliation glaucoma
Invest Ophthalmol Vis Sci (2010) 51(6):2968-75. Epub 2010 Jan 27.

 

D. Murphy, J. Parker, M. Shou, F.M. Fadlelmola, C. Steidl, A. Karsan, R.D. Gascoyne, H. Chen, D. Banerjee
Constitutively overexpressed 21 kDa protein in Hodgkin lymphoma and aggressive non-Hodgkin lymphomas identified as cytochrome B5b (CYB5B).
Mol Cancer. (2010) 9:14.

 

D.S. Gibson, J. Banha, D. Penque, L. Costa, T.P. Conrads, D.J. Cahill, J.K. O'Brien and M.E. Rooney
Diagnostic and prognostic biomarker discovery strategies for autoimmune disorders.
Journal of Proteomics (2010) 73, 1045-1060

 

D.J. O'Connell, M.C. Bauer, J. O'Brien, W.M. Johnson, C.A. Divisio, S.L. O'Kane, T. Berggård, A. Merino, K.S. Åkerfeldt, S. Linse and D.J. Cahill
Integrated protein array screening and high throughput validation of 70 novel neural calmodulin binding proteins.
Mol Cell Proteomics (2010) Jan 12. [Epub ahead of print]
Article

 

G. Kijanka, S. Hector, E.W. Kay, F. Murray, R. Cummins, D. Murphy, B.D. MacCraith, J.H.M. Prehn, D Kenny

Human IgG antibody profiles differentiate between symptomatic patients with and without colorectal cancer.
Gut (2010) 59: 69-78
Article

 

E. Kowens-Leuts, O. Pless, G. Dittmar, M. Knoblich and A. Leuts
Crosstalk between C/EBPß phosphorylation, arginine methylation, and SWI/SNF/Mediator implies an indexing transcription factor code.
The EMBO Journal (2010) 29, 1105-1115
Article

 

2009

 

G. Kijanka, S. IpCho, S. Baars, H. Chen, K. Hadley, A. Beveridge, E. Gould and D. Murphy
Rapid characterisation of binding specificity and cross-reactivity of antibodies using recombinant human protein arrays.
Journal of Immunological Methods (2009) 340, 132-137
Article

 

G. Kijanka, R. Barry, H. Chen, E. Gould, S.K. Seidlits, J. Schmid, M. Morgan, D.Y. Mason, J. Cordell and D. Murphy
Defining the molecular target of an antibody derived from nuclear extract of Jurkat cells using protein arrays.
Analytical Biochemistry (2009) 395 , 119-124
Article

 

G. Kijanka and D. Murphy
Protein arrays as tools for serum autoantibody marker discovery in cancer.
Journal of Proteomics (2009) 72, 936 - 944
Article

 

2008

 

O. Pless, E. Kowenz-Leuts, M. Knoblich, J. Lausen, M. Beyermann, M.J. Walsh and A. Leuts
G9a-mediated Lysine Methylation Alters the Function of CCAAT/Enhancer-binding Protein-ß*.
Journal of Biological Chemistry (2008) 283 (39), 26357-26363
Article

 

2007

 

W.-H. Yang and D.B. Bloch

Probing the mRNA processing body using protein macroarrays and ''autoantigenomics''
RNA (2007), 13:704-712.
Article

 

Before 2007


Cepok S, Shou D, Srivastava R, Nessler S, Stei S, Büssow K, Sommer N, Hemmer B
Identification of Epstein-Barr virus proteins as putative targets of the immune response in multiple sclerosis.
J Clin Invest. (2005) 115(5):1352-60
Article

 

G. Grelle, S. Kostka, A. Otto, B. Kersten, K. Genser, E. Müller, S. Wälter, A. Böddrich, U. Stelsl, C. Hänig,  R. Volkmer-Engert, C. Landgraf, S. Alberti, J. Höhfeld, M. Strödicke, and E. Wanker
Identification of VCP/p97, CHIP and amphiphysin II interaction partners using membrane-based human proteome arrays.
MCP (2005) 10.1074/mcp.M500198−MCP200
Abstract

 

K. de Graaf, P. Hekerman, O. Spelten, A. Herrmann, L. C. Packman, K. Bussow. G. Muller-Newen, W. Becker
Characterisation of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalisation with splicing factors.
J Biol Chem. (2004) 279(6):4612−24
Abstract

 

K. Büssow, C. Quedenau, V. Sievert, J. Tischler, C. Scheich, H. Seits, B. Hieke, F.H. Niesen, F. Gots, U. Harttig, H. Lehrach
A catalog of human cDNA expression clones and its application to structural genomics.
Genome Biol. 2004 Aug; 5(9):R71
Abstract

 

U. Radelof, C.Hüls, B. Korn, J. Maurer
Proteinarrays und rekombinante Proteine für die Proteinanalyse.
Laborwelt 2004. 5: p.35
Article

 

C. Maercker
Protein-Chips in der Genomforschung.
Laborwelt 2004. 4: p.12−15
Article

 

J. Lee and M.T. Bedford
PABP1 identified as an arginine methyltransferase substrate using high-density protein arrays.
EMBO Reports 2002. 3(3): p.268−73
Abstract

 

U. Mahlknecht, O.G. Ottmann, and D. Hoelser
Far-Western based protein-protein interaction screening of high-density protein filter arrays.
Journal of Biotechnology 2001. 88(2): p. 89−94
Abstract

 

K. Büssow, E. Nordhoff, C. Lübbert, H. Lehrach, and G. Walter
A human cDNA library for high-throughput protein expression screening.
Genomics 2000.65(1): 1−8
Abstract

 

L. J. Holt, K. Büssow, G. Walter, and I. M. Tomlinson
By-passing selection: direct screening for antibodyantigen interactions using protein arrays.
Nucleic Acids Research 2000. 28(15): p. E72
Abstract

 

K. Büssow, D. Cahill, W. Nietfeld, D. Bancroft, E. Schersinger, H. Lehrach, and G. Walter
A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library.
Nucleic Acids Research 1998. 26(21): p. 5007−5008 
Abstract

 

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